In order to understand the relationship between the presence of bacteria and cancer prognosis, Ghaddar and colleagues developed a single-cell analysis of host-microbiome interactions (SAHMI) computational pipeline to identify bacteria from single-cell RNA sequencing datasets from patients with pancreatic ductal adenocarcinomas (PDAC). They found that ∼0.6% of total reads could be attributed to microbial species. Using a series of controls to denoise potential contaminants and artifacts, the authors predicted that ∼0.01% of the reads were genuine intracellular-associated microbiota. Using barcodes from scRNA-seq for individual cells, they linked each bacterium to particular cell types. Bacterial reads were most strongly enriched in tumor cells themselves. Specific types of bacteria were associated with specific gene expression patterns, e.g., angiogenesis, differentiation, and metastasis. Tumors with greater bacterial loads exhibited increased fractions of activated T cells and natural killer cells. Finally, they showed that the presence of bacteria in tumors was associated with decreased survival across several cohorts of PDAC patients.Expert Commentary: A subset of pancreatic cancers harbors intracellular bacteria, associated with worse overall survival in patients.Ghaddar B, Biswas A, Harris C, Omary MB, Carpizo DR, Blaser MJ, et al. Tumor microbiome links cellular programs and immunity in pancreatic cancer. Cancer Cell 2022;40:1240-53.e1245. doi: 10.1016/j.ccell.2022.09.009.To discern meningioma risk after treatment for childhood cancer, Withrow and colleagues performed a pooled case-control study of four international cohorts comprising 1011 survivors, 273 of whom developed meningioma. Not surprisingly, meningioma cases occurred most frequently among survivors of central nervous system tumors. Using doses reconstructed to the meningioma site, a fitted linear dose-response model was developed showing that odds of meningioma increased with radiotherapy dose. Risk of meningioma was highest with doses above 24Gy, decreased with age, and was highest in children under age 10. The risk of meningioma remained elevated for 30 years after exposure. Interestingly, methotrexate exposure, both systemic and intrathecal, was associated with a significantly increased risk of meningioma development.Expert Commentary: This study represents the largest analysis of radiation-induced meningiomas to date, powered to clearly identify risk factors. This study supports long-term meningioma surveillance for children radiated under age 10 and recipients of intrathecal or systemic methotrexate.Withrow DR, Anderson H, Armstrong GT, Hawkins M, Journy N, Neglia JP, et al. Pooled analysis of meningioma risk following treatment for childhood cancer. JAMA Oncology; Published online October 6, 2022; doi: 10.1001/jamaoncol.2022.4425.Almost half of patients with resected early-stage lung cancer will experience recurrence, but our ability to predict recurrence is limited. Liu and colleagues identified a recurrent germline SNP in BRMS1, which significantly increased the risk of recurrence. The resulting BRMS1A273V mutant isoform increased migration and metastases through upregulation of the c-fos/CEACAM6 pathway in vitro and in vivo. Remarkably, treatment with a clinical c-fos inhibitor prevented metastases in BRMS1A273V mutant lung cancer.Expert Commentary: This study has not only a identified a recurrent germline SNP as a predictor of recurrence but, in addition, has suggested a novel therapeutic strategy to prevent metastases in BRMS1A273V mutant non-small cell lung cancer.Liu Y, Chudgar N, Mastrogiacomo B, He D, Lankadasari MB, Bapat S, et al. A germline SNP in BRMS1 predisposes patients with lung adenocarcinoma to metastasis and can be ameliorated by targeting c-fos. Science Translational Medicine; Published online October 5, 2022; doi: 10.1126/scitranslmed.abo1050.Checkpoint inhibitors show the highest benefits in triple-negative breast cancer, while luminal, hormone receptor–positive disease is inherently insensitive. Hong and colleagues identified that EZH2, a component of the PRC2 complex, promotes immune escape through epigenetic changes of immune-related genes in either cancer cells or surrounding immune cells. Pharmacological and genetic inhibition of cancer intrinsic EZH2 stimulated antitumor immunity by activating interferon signaling in ERα+ breast cancer. After treatment with EZH2 inhibitors, STAT2 was recruited to the promoters of interferon-stimulated genes and STAT2, rather than STAT1, played a critical role in mediating the immunostimulatory functions of type I interferon signaling. High levels of EZH2, but low levels of STAT2, were associated with worse antitumor immune responses in patients with luminal breast cancer.Expert Commentary: Activation of the type I IFN-STAT2 axis upon EZH2 inhibition serves a pivotal role in establishing an antitumor microenvironment in luminal breast cancer. This provides an opportunity for developing an anticancer strategy by combining EZH2 inhibitors with immunotherapy.Hong J, Lee JH, Zhang Z, Wu Y, Yang M, Liao Y, et al. PRC2-mediated epigenetic suppression of type I IFN-STAT2 signaling impairs antitumor immunity in luminal breast cancer. Cancer Res 2022;82:4624-40.Clear cell kidney cancer (ccRCC) is the most common adult renal tumor. Prognosis is often favorable for localized disease, whereas spread to the skeleton, which occurs in a third of patients, is associated with poor outcome. Alchahin and colleagues collected tumor material (including bone metastases) and nearby normal kidney tissue from the same patient to make matched comparisons and to control for interindividual variation. Using single-cell RNA sequencing, the researchers identified a specific four-gene signature prognostic of the ability of ccRCC cells to form metastases and thus drive poor patient outcome. Notably, they showed that the tumor microenvironment inhibited an immune response. In silico analyses suggested signaling via the ligand receptor axes CXCL9/CXCL10-CXCR3 and CD70-CD27 as putative targets for novel therapies.Expert Commentary: This study sheds light on how knowledge of the relationship between ccRCCs and the tumor microenvironment can be the basis for development of novel cancer medicines.Alchahin AM, Mei S, Tsea J, Hirz T, Kfoury Y, Dahl D, et al. A transcriptional metastatic signature predicts survival in clear cell renal cell carcinoma. Nature Commun 2022; 13:5747. doi: 10.1038/s41467-022-33375-w.The 5th edition of the World Health Organization Classification of Haematolymphoid Tumours: Myeloid and Histiocytic/Dendritic Neoplasms separates acute myeloid leukemia (AML) with defining genetic abnormalities from AML defined by differentiation, new, and/or uncommon AML subtypes that await future definitions. A letter by Ryland and colleagues reports a novel subtype of AML characterized by somatic recurrent in-frame insertion mutations in core-binding factor beta (CBFB) leading to an amino acid change at position 87 (called GDXY). These AML mutational cases separate from the classified CBF subgroup in lacking KIT mutations and enriching for FLT3-TKD mutations, showing stemness-related gene expression associated with relapsed or refractory disease and with younger age. The authors provisionally termed this group CBFB-GDXY. Further investigation is required to understand the clinical relevance of this novel entity.Expert Commentary: Functional and clinical investigations are needed to understand the relevance of a novel AML entity, CBFB-GDXY. This subtype would fit in the current WHO classification structure “AML with other defined genetic alterations.”Ryland G, Umeda M, Holmfeldt L, Lehmann S, Herlin MK, Ma JJ, et al. Description of a novel subtype of acute myeloid leukemia defined by recurrent CBFB insertions. Blood; Published online September 30, 2022; doi: 10.1182/blood.2022017874.Note: Breaking Insights are written by Cancer Research editors. Readers are encouraged to consult the articles referred to in each item for full details on the findings described.